Transforming Wheat Breeding Through Integrated Data Management with GOBii and Analysis in Flapjack
BACKGROUND
Genomic Open-source Breeding informatics initiative (GOBii), http://gobiiproject.org/, funded by the Bill & Melinda Gates Foundation has developed open-source genotype data management and marker- and genomic-assisted breeding tools and are working on integrating these with adjacent data management systems and tools. Its mission is to enable genomic-assisted breeding in routine breeding applications in under-resourced breeding programs. In the last three years, GOBii has given 10+ training and workshops with the audience size ranging between 10 and 75 in Asia, Africa, and US.
WORKSHOP PREPARATION
This workshop focus on GOBii data management and data analysis in Flapjack (marker-assisted backcrossing, pedigree verification and forward breeding) and Galaxy (Genomic Selection).
To be able to follow the workshop you will need to:
Download the Flapjack (which is free), at the following link: https://ics.hutton.ac.uk/flapjack/download-flapjack/
Access Galaxy, at the following link: http://cropgalaxy.excellenceinbreeding.org/
Download materials and speaker´s presentations to work along with the speakers (click below):
- Overview and demo of Flapjack and Curly Wurly – Day 2
- Marker-assisted selection in Flapjack - Day 2
- Forward Breeding and Indexed Forward Breeding - Day 2
- Using Galaxy to conduct Genomic Selection analyses – Day 3
- Datasets - Day 1,2,3
VIDEOS
The full workshop consist of 7 videos plus welcome remarks from guests of honor.
VIDEOS: GUEST OF HONORS
VIDEOS: DAY 1
VIDEOS: DAY 2
VIDEOS: DAY 3
